Index (bottled 0.8.0 API)

A B C D E F G H I K L M N O P Q R S T U V W Y
All Classes and Interfaces|All Packages|Constant Field Values

A

AbstractBottle - Class in org.gaardeon.bottled.simple: Abstract base class for a named sub-network of spiking neurons (Nerons) and synapses.
AbstractBottle(String, Random) - Constructor for class org.gaardeon.bottled.simple.AbstractBottle
addIncomingConnection(Connection) - Method in class org.gaardeon.bottled2.Neuron
AddingRationalDiminisher - Class in org.gaardeon.bottled.functions: A value updater that applies rational diminishing returns.
AddingRationalDiminisher(double) - Constructor for class org.gaardeon.bottled.functions.AddingRationalDiminisher
addNeuron(String) - Method in class org.gaardeon.bottled3.Network
addNeuronConnection(Neuron, Neuron) - Method in class org.gaardeon.bottled2.Bottle
addOutgoingConnection(Connection) - Method in class org.gaardeon.bottled2.Neuron
addSynapse(Neron, Neron, double, double) - Method in class org.gaardeon.bottled.simple.AbstractBottle: Add a single synapse to this bottle's synapse list.
allNeurons - Variable in class org.gaardeon.bottled.simple.AbstractBottle
allNeurons - Variable in class org.gaardeon.bottled.simple.Bottle
allNeurons - Variable in class org.gaardeon.bottled2.Bottle
applyFeedback(double) - Method in class org.gaardeon.bottled2.ChessBrain
applyHebbian() - Method in class org.gaardeon.bottled2.Neuron
applyHebbianLearning() - Method in class org.gaardeon.bottled2.Bottle
applyHormone(Hormone) - Method in class org.gaardeon.bottled2.Bottle
applyOutputFeedback(double[]) - Method in class org.gaardeon.bottled2.Bottle
Architecture - Section in class org.gaardeon.bottled3.NeuralModel
asciiBoard() - Method in class org.gaardeon.bottled.minichess.Position

B

BB - Enum constant in enum class org.gaardeon.bottled.minichess.Piece
bishops() - Method in record class org.gaardeon.bottled.simple.ChessBrainRunner.BoardHash: Returns the value of the bishops record component.
bishops() - Method in record class org.gaardeon.bottled2.ChessBrainRunner.BoardHash: Returns the value of the bishops record component.
bishops() - Method in record class org.gaardeon.bottled3.ChessBrainRunner.BoardHash: Returns the value of the bishops record component.
BitBuffer - Class in org.gaardeon.bottled
BitBuffer(ByteBuffer) - Constructor for class org.gaardeon.bottled.BitBuffer
BitBuffer(ByteBuffer, int, int) - Constructor for class org.gaardeon.bottled.BitBuffer
BK - Enum constant in enum class org.gaardeon.bottled.minichess.Piece
BLACK_WINS - Enum constant in enum class org.gaardeon.bottled.minichess.Game.Result
BN - Enum constant in enum class org.gaardeon.bottled.minichess.Piece
board - Variable in class org.gaardeon.bottled.minichess.Position
BoardHash(long, long, long, long, long, long, long) - Constructor for record class org.gaardeon.bottled.simple.ChessBrainRunner.BoardHash: Creates an instance of a BoardHash record class.
BoardHash(long, long, long, long, long, long, long) - Constructor for record class org.gaardeon.bottled2.ChessBrainRunner.BoardHash: Creates an instance of a BoardHash record class.
BoardHash(long, long, long, long, long, long, long) - Constructor for record class org.gaardeon.bottled3.ChessBrainRunner.BoardHash: Creates an instance of a BoardHash record class.
Bottle - Class in org.gaardeon.bottled.simple: A named sub-network of spiking neurons (Nerons) and synapses.
Bottle - Class in org.gaardeon.bottled2
Bottle - Interface in org.gaardeon.bottled
Bottle(String, int, int, int) - Constructor for class org.gaardeon.bottled.simple.Bottle
Bottle(String, int, int, int) - Constructor for class org.gaardeon.bottled2.Bottle
Bottle(String, int, int, int, Random) - Constructor for class org.gaardeon.bottled.simple.Bottle
BottleType - Enum Class in org.gaardeon.bottled
BP - Enum constant in enum class org.gaardeon.bottled.minichess.Piece
BQ - Enum constant in enum class org.gaardeon.bottled.minichess.Piece
BR - Enum constant in enum class org.gaardeon.bottled.minichess.Piece
Brain - Class in org.gaardeon.bottled
Brain(Bottle, Bottle, Bottle[]) - Constructor for class org.gaardeon.bottled.Brain
Brain.Builder - Class in org.gaardeon.bottled
build() - Method in class org.gaardeon.bottled.Brain.Builder
Builder() - Constructor for class org.gaardeon.bottled.Brain.Builder

C

ChessBrain - Class in org.gaardeon.bottled.simple: Test harness that wires three Bottles in a feedforward pipeline for use as a chess-position evaluator.
ChessBrain - Class in org.gaardeon.bottled2
ChessBrain - Class in org.gaardeon.bottled3: A three-layer spiking network for evaluating chess positions, built on top of the connection-centric Network from bottled3.
ChessBrain(Bottle, Bottle, Bottle) - Constructor for class org.gaardeon.bottled.simple.ChessBrain
ChessBrain(Bottle, Bottle, Bottle) - Constructor for class org.gaardeon.bottled2.ChessBrain
ChessBrain(Network, List, List, List) - Constructor for class org.gaardeon.bottled3.ChessBrain
ChessBrainRunner - Class in org.gaardeon.bottled.simple: Main driver for the simple-model ChessBrain.
ChessBrainRunner - Class in org.gaardeon.bottled2
ChessBrainRunner - Class in org.gaardeon.bottled3: Drives a bottled3 ChessBrain with a fixed chess position and lets the BCM plasticity in the Connections reshape the weights over many trials.
ChessBrainRunner() - Constructor for class org.gaardeon.bottled.simple.ChessBrainRunner
ChessBrainRunner() - Constructor for class org.gaardeon.bottled2.ChessBrainRunner
ChessBrainRunner() - Constructor for class org.gaardeon.bottled3.ChessBrainRunner
ChessBrainRunner.BoardHash - Record Class in org.gaardeon.bottled.simple
ChessBrainRunner.BoardHash - Record Class in org.gaardeon.bottled2
ChessBrainRunner.BoardHash - Record Class in org.gaardeon.bottled3
clear() - Method in class org.gaardeon.bottled.BitBuffer
color - Variable in enum class org.gaardeon.bottled.minichess.Piece
colors() - Method in record class org.gaardeon.bottled.simple.ChessBrainRunner.BoardHash: Returns the value of the colors record component.
colors() - Method in record class org.gaardeon.bottled2.ChessBrainRunner.BoardHash: Returns the value of the colors record component.
colors() - Method in record class org.gaardeon.bottled3.ChessBrainRunner.BoardHash: Returns the value of the colors record component.
connect(Object, Object) - Method in class org.gaardeon.bottled.Brain.Builder
connect(Neuron, Neuron, double, boolean) - Method in class org.gaardeon.bottled3.Network
Connection - Class in org.gaardeon.bottled.structs
Connection - Class in org.gaardeon.bottled2
Connection - Class in org.gaardeon.bottled3: A directed synaptic connection from one neuron to another.
Connection() - Constructor for class org.gaardeon.bottled.structs.Connection
Connection(Neuron, Neuron, double) - Constructor for class org.gaardeon.bottled2.Connection
Connection(Neuron, Neuron, double, boolean) - Constructor for class org.gaardeon.bottled3.Connection
connectionCount() - Method in class org.gaardeon.bottled2.Bottle
ConnectionRange - Record Class in org.gaardeon.bottled
ConnectionRange(int, int, int) - Constructor for record class org.gaardeon.bottled.ConnectionRange: Creates an instance of a ConnectionRange record class.
ConnectionRangePattern - Class in org.gaardeon.bottled
ConnectionRangePattern(int, int) - Constructor for class org.gaardeon.bottled.ConnectionRangePattern
connections - Variable in class org.gaardeon.bottled2.Bottle
connections - Variable in class org.gaardeon.bottled3.Network
ConnectionStyle - Enum Class in org.gaardeon.bottled
connectSets(AbstractBottle, List, List, double, double, double) - Method in class org.gaardeon.bottled.simple.AbstractBottle: Create synapses from sources to targets with the given connection density, registering each resulting synapse on owner 's synapse list.
connectTo(AbstractBottle, double, double, double) - Method in class org.gaardeon.bottled.simple.AbstractBottle: Create synapses from this bottle's output neurons to another bottle's input neurons.
connectTo(Bottle, double, double, double) - Method in class org.gaardeon.bottled.simple.Bottle: Create synapses from this bottle's output neurons to another bottle's input neurons.
connectTo(Bottle, double, double) - Method in class org.gaardeon.bottled2.Bottle
connectToInput(Bottle) - Method in interface org.gaardeon.bottled.Bottle
connectToInput(Bottle) - Method in class org.gaardeon.bottled.LayeredBottle
connStart() - Method in record class org.gaardeon.bottled.ConnectionRange: Returns the value of the connStart record component.
countFiring() - Method in class org.gaardeon.bottled.simple.AbstractBottle
countFiring() - Method in class org.gaardeon.bottled.simple.Bottle
countFiring() - Method in class org.gaardeon.bottled2.Bottle
countFiring(List) - Method in class org.gaardeon.bottled3.ChessBrain
countFiringHidden() - Method in class org.gaardeon.bottled.simple.FeedForwardBottle: Total neurons firing across all hidden layers this tick.
countFiringHidden(int) - Method in class org.gaardeon.bottled.simple.FeedForwardBottle: Neurons firing in a specific hidden layer this tick.
countFiringInputs() - Method in class org.gaardeon.bottled.simple.AbstractBottle
countFiringInputs() - Method in class org.gaardeon.bottled.simple.Bottle
countFiringInternal() - Method in class org.gaardeon.bottled.simple.Bottle
countFiringInternal() - Method in class org.gaardeon.bottled.simple.HopfieldBottle
countFiringOutputs() - Method in class org.gaardeon.bottled.simple.AbstractBottle
countFiringOutputs() - Method in class org.gaardeon.bottled.simple.Bottle
countFiringRates() - Method in class org.gaardeon.bottled.simple.Bottle
createInternalConnections(double, double) - Method in class org.gaardeon.bottled2.Bottle
createNeurons(List, int) - Method in class org.gaardeon.bottled.simple.AbstractBottle: Create count fresh neurons, append them to targetList (typically one of inputNeurons, outputNeurons, or a subclass-specific hidden/internal list), and register each one in allNeurons so it gets stepped each tick.

D

DblArrayOutputBottle - Class in org.gaardeon.bottled
DblArrayOutputBottle(int) - Constructor for class org.gaardeon.bottled.DblArrayOutputBottle
decay() - Method in class org.gaardeon.bottled2.Connection
decayConnections() - Method in class org.gaardeon.bottled2.Bottle
decode(double[]) - Method in class org.gaardeon.bottled.simple.PopulationCoder: Convenience overload for callers that just want a value with a sensible fallback when the network is silent.
decode(double[], double) - Method in class org.gaardeon.bottled.simple.PopulationCoder: Decode a scalar from the firing-rate vector of the coding neurons.
deposit(double, boolean) - Method in class org.gaardeon.bottled3.Neuron: Thread-safe deposit from a connection.
dilute(double) - Method in record class org.gaardeon.bottled2.Hormone
DIRECTED_FULL_INTERCONNECTION - Enum constant in enum class org.gaardeon.bottled.ConnectionStyle
direction() - Method in record class org.gaardeon.bottled2.Hormone: Returns the value of the direction record component.
DOUBLE - Enum constant in enum class org.gaardeon.bottled.InputType
DOUBLE - Enum constant in enum class org.gaardeon.bottled.OutputType
DOUBLE_ARR - Enum constant in enum class org.gaardeon.bottled.InputType
DOUBLE_ARR - Enum constant in enum class org.gaardeon.bottled.OutputType
DoubleOutputBottle - Class in org.gaardeon.bottled
DoubleOutputBottle(int) - Constructor for class org.gaardeon.bottled.DoubleOutputBottle
DRAW_PLY_LIMIT - Enum constant in enum class org.gaardeon.bottled.minichess.Game.Result
DRAW_STALEMATE - Enum constant in enum class org.gaardeon.bottled.minichess.Game.Result
duplicate() - Method in class org.gaardeon.bottled.BitBuffer

E

emitLocalHormone(Neuron, Hormone, int) - Method in class org.gaardeon.bottled2.Bottle
equals(Object) - Method in record class org.gaardeon.bottled.ConnectionRange: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class org.gaardeon.bottled.minichess.Move: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class org.gaardeon.bottled.simple.ChessBrainRunner.BoardHash: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class org.gaardeon.bottled2.ChessBrainRunner.BoardHash: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class org.gaardeon.bottled2.Hormone: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class org.gaardeon.bottled3.ChessBrainRunner.BoardHash: Indicates whether some other object is "equal to" this one.
evaluate(Position) - Method in interface org.gaardeon.bottled.minichess.Evaluator
evaluate(Position) - Method in class org.gaardeon.bottled.minichess.MaterialEvaluator
Evaluator - Interface in org.gaardeon.bottled.minichess: A position evaluator.
EXCITABILITY_MODULATOR - Enum constant in enum class org.gaardeon.bottled2.HormoneType
excite(double) - Method in class org.gaardeon.bottled.simple.Neron

F

FEEDBACK_SIGNAL - Enum constant in enum class org.gaardeon.bottled2.HormoneType
FeedForwardBottle - Class in org.gaardeon.bottled.simple: A Bottle with strictly feedforward, layered topology:
FeedForwardBottle(String, int, int[], int, double, double, double) - Constructor for class org.gaardeon.bottled.simple.FeedForwardBottle: Convenience constructor that supplies a fresh Random.
FeedForwardBottle(String, int, int[], int, double, double, double, Random) - Constructor for class org.gaardeon.bottled.simple.FeedForwardBottle
finalPosition - Variable in class org.gaardeon.bottled.minichess.Game.GameRecord
findKing(boolean) - Method in class org.gaardeon.bottled.minichess.Position
fired - Variable in class org.gaardeon.bottled3.Neuron: Whether the neuron fired during the most recently completed step.
firedLast() - Method in class org.gaardeon.bottled.simple.Neron
flip() - Method in class org.gaardeon.bottled.BitBuffer
FLOAT - Enum constant in enum class org.gaardeon.bottled.InputType
FLOAT - Enum constant in enum class org.gaardeon.bottled.OutputType
FLOAT_ARR - Enum constant in enum class org.gaardeon.bottled.InputType
FLOAT_ARR - Enum constant in enum class org.gaardeon.bottled.OutputType
FloatOutputBottle - Class in org.gaardeon.bottled
FloatOutputBottle(int) - Constructor for class org.gaardeon.bottled.FloatOutputBottle
FloatValueSequence - Interface in org.gaardeon.bottled
from() - Method in record class org.gaardeon.bottled.minichess.Move: Returns the value of the from record component.
FULL_CONNECTED - Enum constant in enum class org.gaardeon.bottled.BottleType
FULL_INTERCONNECTION - Enum constant in enum class org.gaardeon.bottled.ConnectionStyle
FullyConnectedBottle - Class in org.gaardeon.bottled
FullyConnectedBottle(int, int) - Constructor for class org.gaardeon.bottled.FullyConnectedBottle

G

Game - Class in org.gaardeon.bottled.minichess: Game loop and smoke-test main.
Game() - Constructor for class org.gaardeon.bottled.minichess.Game
Game.GameRecord - Class in org.gaardeon.bottled.minichess
Game.Result - Enum Class in org.gaardeon.bottled.minichess
GameRecord(Game.Result, int, String, Position) - Constructor for class org.gaardeon.bottled.minichess.Game.GameRecord
generateLegalMoves() - Method in class org.gaardeon.bottled.minichess.Position
generatePseudoLegalMoves() - Method in class org.gaardeon.bottled.minichess.Position
get() - Method in class org.gaardeon.bottled.BitBuffer
get() - Method in interface org.gaardeon.bottled.FloatValueSequence
get(int) - Method in class org.gaardeon.bottled.BitBuffer
getAllNeurons() - Method in class org.gaardeon.bottled.simple.AbstractBottle
getAllNeurons() - Method in class org.gaardeon.bottled.simple.Bottle
getAllNeurons() - Method in class org.gaardeon.bottled2.Bottle
getBaseWeight() - Method in class org.gaardeon.bottled2.Connection
getConnectionCount() - Method in class org.gaardeon.bottled3.ChessBrain
getCurrentWeights() - Method in class org.gaardeon.bottled.SynapseSet
getEffectiveWeight() - Method in class org.gaardeon.bottled2.Connection
getEvaluationScore() - Method in class org.gaardeon.bottled.simple.ChessBrain: Read the population-coded evaluation.
getEvaluationScore() - Method in class org.gaardeon.bottled2.ChessBrain
getEvaluationScore() - Method in class org.gaardeon.bottled3.ChessBrain: Evaluation score: the activity trace of the first output neuron.
getExcitation() - Method in class org.gaardeon.bottled2.Neuron
getFastAdjustment() - Method in class org.gaardeon.bottled2.Connection
getFireValues() - Method in class org.gaardeon.bottled.NeuronSet
getHappiness() - Method in class org.gaardeon.bottled2.Neuron
getHiddenBottle() - Method in class org.gaardeon.bottled.simple.ChessBrain
getHiddenBottle() - Method in class org.gaardeon.bottled2.ChessBrain
getHiddenLayer(int) - Method in class org.gaardeon.bottled.simple.FeedForwardBottle: The i-th hidden layer (0 = closest to input).
getHiddenLayers() - Method in class org.gaardeon.bottled.simple.FeedForwardBottle: All hidden layers, in order from input-adjacent to output-adjacent.
getHiddenNeurons() - Method in class org.gaardeon.bottled3.ChessBrain
getId() - Method in class org.gaardeon.bottled.simple.AbstractBottle
getId() - Method in class org.gaardeon.bottled.simple.Bottle
getId() - Method in class org.gaardeon.bottled2.Bottle
getIncomingCount() - Method in class org.gaardeon.bottled2.Neuron
getInputBottle() - Method in class org.gaardeon.bottled.simple.ChessBrain
getInputBottle() - Method in class org.gaardeon.bottled2.ChessBrain
getInputNeurons() - Method in class org.gaardeon.bottled.simple.AbstractBottle
getInputNeurons() - Method in class org.gaardeon.bottled.simple.Bottle
getInputNeurons() - Method in class org.gaardeon.bottled2.Bottle
getInputNeurons() - Method in class org.gaardeon.bottled3.ChessBrain
getInternalNeurons() - Method in class org.gaardeon.bottled.simple.Bottle
getInternalNeurons() - Method in class org.gaardeon.bottled.simple.HopfieldBottle: The recurrent middle population.
getLastWeightChange() - Method in class org.gaardeon.bottled2.Connection
getNetwork() - Method in class org.gaardeon.bottled3.ChessBrain
getNeuronBasics() - Method in class org.gaardeon.bottled.NeuronSet
getOutputBottle() - Method in class org.gaardeon.bottled.simple.ChessBrain
getOutputBottle() - Method in class org.gaardeon.bottled2.ChessBrain
getOutputFiringStates() - Method in class org.gaardeon.bottled.simple.AbstractBottle: True for each output neuron that fired on the most recent step.
getOutputFiringStates() - Method in class org.gaardeon.bottled.simple.Bottle: True for each output neuron that fired on the most recent step.
getOutputFiringStates() - Method in class org.gaardeon.bottled2.Bottle
getOutputLongTermRates() - Method in class org.gaardeon.bottled.simple.AbstractBottle: Long-term (slow) firing rate of each output neuron.
getOutputLongTermRates() - Method in class org.gaardeon.bottled.simple.Bottle: Long-term (slow) firing rate of each output neuron.
getOutputNeurons() - Method in class org.gaardeon.bottled.simple.AbstractBottle
getOutputNeurons() - Method in class org.gaardeon.bottled.simple.Bottle
getOutputNeurons() - Method in class org.gaardeon.bottled2.Bottle
getOutputNeurons() - Method in class org.gaardeon.bottled3.ChessBrain
getOutputs() - Method in class org.gaardeon.bottled2.Bottle
getOutputShortTermRates() - Method in class org.gaardeon.bottled.simple.AbstractBottle: Smoothed short-term firing rate of each output neuron (continuous analog of "activation").
getOutputShortTermRates() - Method in class org.gaardeon.bottled.simple.Bottle: Smoothed short-term firing rate of each output neuron (continuous analog of "activation").
getParentBottle() - Method in class org.gaardeon.bottled2.Neuron
getSourceNeuron() - Method in class org.gaardeon.bottled2.Connection
getSynapseCount() - Method in class org.gaardeon.bottled.simple.ChessBrain
getSynapses() - Method in class org.gaardeon.bottled.simple.AbstractBottle
getSynapses() - Method in class org.gaardeon.bottled.simple.Bottle
getTargetNeuron() - Method in class org.gaardeon.bottled2.Connection
getThreshold() - Method in class org.gaardeon.bottled2.Neuron
gExc - Variable in class org.gaardeon.bottled3.Neuron: Persistent excitatory conductance.
gInh - Variable in class org.gaardeon.bottled3.Neuron: Persistent inhibitory conductance.
GreedyEngine - Class in org.gaardeon.bottled.minichess: 1-ply greedy search: for each legal move, make it, ask the evaluator for the resulting score, and pick the move that is best for the side to move.
GreedyEngine(Evaluator, long) - Constructor for class org.gaardeon.bottled.minichess.GreedyEngine

H

hashCode() - Method in record class org.gaardeon.bottled.ConnectionRange: Returns a hash code value for this object.
hashCode() - Method in record class org.gaardeon.bottled.minichess.Move: Returns a hash code value for this object.
hashCode() - Method in record class org.gaardeon.bottled.simple.ChessBrainRunner.BoardHash: Returns a hash code value for this object.
hashCode() - Method in record class org.gaardeon.bottled2.ChessBrainRunner.BoardHash: Returns a hash code value for this object.
hashCode() - Method in record class org.gaardeon.bottled2.Hormone: Returns a hash code value for this object.
hashCode() - Method in record class org.gaardeon.bottled3.ChessBrainRunner.BoardHash: Returns a hash code value for this object.
hasMore() - Method in interface org.gaardeon.bottled.FloatValueSequence
hasRemaining() - Method in class org.gaardeon.bottled.BitBuffer
hiddenLayerCount() - Method in class org.gaardeon.bottled.simple.FeedForwardBottle: Number of hidden layers (0 if input is wired directly to output).
HopfieldBottle - Class in org.gaardeon.bottled.simple: A Bottle with three populations -- inputs, internals, outputs -- wired as: input → internal (feedforward, sparse) internal ↔ internal (Hopfield-style recurrence: two independent directional synapses per pair, density configurable) internal → output (feedforward, sparse)
HopfieldBottle(String, int, int, int, double, double, double, double) - Constructor for class org.gaardeon.bottled.simple.HopfieldBottle: Convenience constructor that supplies a fresh Random.
HopfieldBottle(String, int, int, int, double, double, double, double, Random) - Constructor for class org.gaardeon.bottled.simple.HopfieldBottle
Hormone - Record Class in org.gaardeon.bottled2
Hormone(HormoneType, double, double) - Constructor for record class org.gaardeon.bottled2.Hormone: Creates an instance of a Hormone record class.
HormoneType - Enum Class in org.gaardeon.bottled2

I

inhibit(double) - Method in class org.gaardeon.bottled.simple.Neron
inhibitory - Variable in class org.gaardeon.bottled3.Connection: Whether this connection is inhibitory.
INPUT - Enum constant in enum class org.gaardeon.bottled.BottleType
INPUT_DRIVE - Static variable in class org.gaardeon.bottled3.ChessBrain: Magnitude of excitatory conductance injected per tick into an input neuron whose input bit is 1.
inputNeurons - Variable in class org.gaardeon.bottled.simple.AbstractBottle
inputNeurons - Variable in class org.gaardeon.bottled.simple.Bottle
inputNeurons - Variable in class org.gaardeon.bottled2.Bottle
inputSize(int) - Method in class org.gaardeon.bottled.Brain.Builder
inputType(InputType) - Method in class org.gaardeon.bottled.Brain.Builder
InputType - Enum Class in org.gaardeon.bottled
INT - Enum constant in enum class org.gaardeon.bottled.InputType
INT - Enum constant in enum class org.gaardeon.bottled.OutputType
INT_ARR - Enum constant in enum class org.gaardeon.bottled.InputType
INT_ARR - Enum constant in enum class org.gaardeon.bottled.OutputType
interiorBottle(Object, int, int, BottleType...) - Method in class org.gaardeon.bottled.Brain.Builder
internalNeurons - Variable in class org.gaardeon.bottled.simple.Bottle
internalNeurons - Variable in class org.gaardeon.bottled2.Bottle
isBlack() - Method in enum class org.gaardeon.bottled.minichess.Piece
isCheckmate() - Method in class org.gaardeon.bottled.minichess.Position
isEmpty() - Method in enum class org.gaardeon.bottled.minichess.Piece
isEnemy(boolean) - Method in enum class org.gaardeon.bottled.minichess.Piece: True if this piece belongs to the opposing side.
isFiring() - Method in class org.gaardeon.bottled2.Neuron
isFriendly(boolean) - Method in enum class org.gaardeon.bottled.minichess.Piece: True if this piece belongs to the given side.
isInCheck(boolean) - Method in class org.gaardeon.bottled.minichess.Position
isReadySignaling() - Method in class org.gaardeon.bottled.simple.ChessBrain: "Ready" is now the last output neuron.
isReadySignaling() - Method in class org.gaardeon.bottled2.ChessBrain
isReadySignaling() - Method in class org.gaardeon.bottled3.ChessBrain: Whether the network is signaling "ready" via the second output neuron.
isSquareAttacked(int, boolean) - Method in class org.gaardeon.bottled.minichess.Position: Is the given square attacked by any piece of the given color?
isStalemate() - Method in class org.gaardeon.bottled.minichess.Position
isWhite() - Method in enum class org.gaardeon.bottled.minichess.Piece
iterateRanges(int, int) - Method in class org.gaardeon.bottled.ConnectionRangePattern

K

kings() - Method in record class org.gaardeon.bottled.simple.ChessBrainRunner.BoardHash: Returns the value of the kings record component.
kings() - Method in record class org.gaardeon.bottled2.ChessBrainRunner.BoardHash: Returns the value of the kings record component.
kings() - Method in record class org.gaardeon.bottled3.ChessBrainRunner.BoardHash: Returns the value of the kings record component.
knights() - Method in record class org.gaardeon.bottled.simple.ChessBrainRunner.BoardHash: Returns the value of the knights record component.
knights() - Method in record class org.gaardeon.bottled2.ChessBrainRunner.BoardHash: Returns the value of the knights record component.
knights() - Method in record class org.gaardeon.bottled3.ChessBrainRunner.BoardHash: Returns the value of the knights record component.

L

LAYERED - Enum constant in enum class org.gaardeon.bottled.BottleType
LayeredBottle - Class in org.gaardeon.bottled
LayeredBottle(int, int) - Constructor for class org.gaardeon.bottled.LayeredBottle
LEARNING_MODULATOR - Enum constant in enum class org.gaardeon.bottled2.HormoneType
limit() - Method in class org.gaardeon.bottled.BitBuffer
limit(int) - Method in class org.gaardeon.bottled.BitBuffer
LONG_BITMASK - Enum constant in enum class org.gaardeon.bottled.InputType
LONG_BITMASK - Enum constant in enum class org.gaardeon.bottled.OutputType
LONG_BITMASK_ARR - Enum constant in enum class org.gaardeon.bottled.InputType
LONG_BITMASK_ARR - Enum constant in enum class org.gaardeon.bottled.OutputType
LongBitmaskArrInputBottle - Class in org.gaardeon.bottled
LongBitmaskArrInputBottle(int) - Constructor for class org.gaardeon.bottled.LongBitmaskArrInputBottle
longTermRate() - Method in class org.gaardeon.bottled.simple.Neron
lr - Variable in class org.gaardeon.bottled3.Connection: Per-connection learning rate.

M

main(String[]) - Static method in class org.gaardeon.bottled.minichess.Game
main(String[]) - Static method in class org.gaardeon.bottled.simple.ChessBrainRunner
main(String[]) - Static method in class org.gaardeon.bottled2.ChessBrainRunner
main(String[]) - Static method in class org.gaardeon.bottled3.ChessBrainRunner
main(String[]) - Static method in class org.gaardeon.bottled3.NeuralModel
makeMove(Move) - Method in class org.gaardeon.bottled.minichess.Position
MaterialEvaluator - Class in org.gaardeon.bottled.minichess: Simple material count.
MaterialEvaluator() - Constructor for class org.gaardeon.bottled.minichess.MaterialEvaluator
Membrane integration - Section in class org.gaardeon.bottled3.NeuralModel
mkConnections() - Method in class org.gaardeon.bottled.Brain.Builder
Move - Record Class in org.gaardeon.bottled.minichess: An intended move.
Move(int, int) - Constructor for record class org.gaardeon.bottled.minichess.Move
Move(int, int, Piece) - Constructor for record class org.gaardeon.bottled.minichess.Move: Creates an instance of a Move record class.

N

name - Variable in class org.gaardeon.bottled3.Neuron
Neron - Class in org.gaardeon.bottled.simple
Neron() - Constructor for class org.gaardeon.bottled.simple.Neron
Network - Class in org.gaardeon.bottled3: Container for neurons and connections, with a single-threaded driver loop.
Network() - Constructor for class org.gaardeon.bottled3.Network
NeuralModel - Class in org.gaardeon.bottled3: Conductance-based spiking neuron with connection-driven plasticity.
NeuralModel() - Constructor for class org.gaardeon.bottled3.NeuralModel
Neuron - Class in org.gaardeon.bottled.structs
Neuron - Class in org.gaardeon.bottled2
Neuron - Class in org.gaardeon.bottled3: A single conductance-based leaky integrate-and-fire neuron with a BCM-style sliding activity threshold.
Neuron() - Constructor for class org.gaardeon.bottled.structs.Neuron
Neuron(String) - Constructor for class org.gaardeon.bottled3.Neuron
Neuron(Bottle) - Constructor for class org.gaardeon.bottled2.Neuron
neuronFiringStart() - Method in record class org.gaardeon.bottled.ConnectionRange: Returns the value of the neuronFiringStart record component.
neurons - Variable in class org.gaardeon.bottled3.Network
NeuronSet - Class in org.gaardeon.bottled
NeuronSet - Class in org.gaardeon.bottled.structs
NeuronSet() - Constructor for class org.gaardeon.bottled.structs.NeuronSet
NeuronSet(int, ByteBuffer) - Constructor for class org.gaardeon.bottled.NeuronSet
NONE - Enum constant in enum class org.gaardeon.bottled.minichess.Piece
noteTargetFiringChange(boolean) - Method in class org.gaardeon.bottled2.Connection
numConns() - Method in record class org.gaardeon.bottled.ConnectionRange: Returns the value of the numConns record component.

O

org.gaardeon.bottled - module org.gaardeon.bottled
org.gaardeon.bottled - package org.gaardeon.bottled
org.gaardeon.bottled.functions - package org.gaardeon.bottled.functions
org.gaardeon.bottled.minichess - package org.gaardeon.bottled.minichess
org.gaardeon.bottled.simple - package org.gaardeon.bottled.simple
org.gaardeon.bottled.structs - package org.gaardeon.bottled.structs
org.gaardeon.bottled2 - package org.gaardeon.bottled2
org.gaardeon.bottled3 - package org.gaardeon.bottled3
OUTPUT - Enum constant in enum class org.gaardeon.bottled.BottleType
outputNeurons - Variable in class org.gaardeon.bottled.simple.AbstractBottle
outputNeurons - Variable in class org.gaardeon.bottled.simple.Bottle
outputNeurons - Variable in class org.gaardeon.bottled2.Bottle
outputSize(int) - Method in class org.gaardeon.bottled.Brain.Builder
outputType(OutputType) - Method in class org.gaardeon.bottled.Brain.Builder
OutputType - Enum Class in org.gaardeon.bottled

P

pawns() - Method in record class org.gaardeon.bottled.simple.ChessBrainRunner.BoardHash: Returns the value of the pawns record component.
pawns() - Method in record class org.gaardeon.bottled2.ChessBrainRunner.BoardHash: Returns the value of the pawns record component.
pawns() - Method in record class org.gaardeon.bottled3.ChessBrainRunner.BoardHash: Returns the value of the pawns record component.
pendingExc - Variable in class org.gaardeon.bottled3.Neuron: Concurrent inbox for excitatory deposits arriving from connections during the connection phase.
pendingInh - Variable in class org.gaardeon.bottled3.Neuron: Concurrent inbox for inhibitory deposits.
perft(Position, int) - Static method in class org.gaardeon.bottled.minichess.Position
pgnMoves - Variable in class org.gaardeon.bottled.minichess.Game.GameRecord
pickMove(Position) - Method in class org.gaardeon.bottled.minichess.GreedyEngine: Returns the chosen move, or null if there are no legal moves.
Piece - Enum Class in org.gaardeon.bottled.minichess: A chess piece, with color baked in.
Plasticity - Section in class org.gaardeon.bottled3.NeuralModel
playGame(GreedyEngine, GreedyEngine, int) - Static method in class org.gaardeon.bottled.minichess.Game
plies - Variable in class org.gaardeon.bottled.minichess.Game.GameRecord
ply - Variable in class org.gaardeon.bottled.minichess.Position
PopulationCoder - Class in org.gaardeon.bottled.simple: Population code over a 1-D scalar range using Gaussian tuning curves.
PopulationCoder(int, double, double, double, double) - Constructor for class org.gaardeon.bottled.simple.PopulationCoder
Position - Class in org.gaardeon.bottled.minichess: Immutable chess position.
Position(Piece[], boolean, int) - Constructor for class org.gaardeon.bottled.minichess.Position
post - Variable in class org.gaardeon.bottled3.Connection
pre - Variable in class org.gaardeon.bottled3.Connection
preferredValue(int) - Method in class org.gaardeon.bottled.simple.PopulationCoder
preTrace - Variable in class org.gaardeon.bottled3.Connection: Presynaptic eligibility trace.
promotion() - Method in record class org.gaardeon.bottled.minichess.Move: Returns the value of the promotion record component.
PUNISHMENT_SIGNAL - Enum constant in enum class org.gaardeon.bottled2.HormoneType
put(boolean) - Method in class org.gaardeon.bottled.BitBuffer
put(int, boolean) - Method in class org.gaardeon.bottled.BitBuffer

Q

queens() - Method in record class org.gaardeon.bottled.simple.ChessBrainRunner.BoardHash: Returns the value of the queens record component.
queens() - Method in record class org.gaardeon.bottled2.ChessBrainRunner.BoardHash: Returns the value of the queens record component.
queens() - Method in record class org.gaardeon.bottled3.ChessBrainRunner.BoardHash: Returns the value of the queens record component.

R

random - Variable in class org.gaardeon.bottled.simple.AbstractBottle
random - Variable in class org.gaardeon.bottled.simple.Bottle
random - Variable in class org.gaardeon.bottled2.Bottle
receiveConnectionFeedback(Connection, double) - Method in class org.gaardeon.bottled2.Neuron
receiveHormone(Hormone) - Method in class org.gaardeon.bottled2.Neuron
RECURRENT - Enum constant in enum class org.gaardeon.bottled.BottleType
refractory - Variable in class org.gaardeon.bottled3.Neuron: Remaining absolute refractory time in milliseconds.
refractoryCount() - Method in class org.gaardeon.bottled.simple.Neron
reset() - Method in interface org.gaardeon.bottled.FloatValueSequence
reset() - Method in class org.gaardeon.bottled.simple.AbstractBottle: Reset all neurons and all synapses in this bottle.
reset() - Method in class org.gaardeon.bottled.simple.Bottle: Reset all neurons and all synapses in this bottle.
reset() - Method in class org.gaardeon.bottled.simple.ChessBrain: Reset all dynamic state across all three bottles.
reset() - Method in class org.gaardeon.bottled.simple.Neron: Reset all dynamic state back to initial values.
reset() - Method in class org.gaardeon.bottled.simple.Synapse: Reset the transient, fast, medium, and slow Hebbian adjustments, and clear the recent-pre-firing tracker.
reset() - Method in class org.gaardeon.bottled2.Bottle
resetAllNeurons() - Method in class org.gaardeon.bottled2.ChessBrain
resetNeurons() - Method in class org.gaardeon.bottled.simple.AbstractBottle: Reset only the neurons -- leaves synapse state (including transient Hebbian adjustments) untouched.
resetNeurons() - Method in class org.gaardeon.bottled.simple.Bottle: Reset only the neurons -- leaves synapse state (including transient Hebbian adjustments) untouched.
resetNeurons() - Method in class org.gaardeon.bottled.simple.ChessBrain: Reset only neural dynamic state -- leaves in-flight Hebbian learning alone.
resetNeuronState() - Method in class org.gaardeon.bottled3.ChessBrain: Reset all neuron membrane state but leave connection weights and BCM thresholds intact, so each "trial" starts the position fresh without forgetting what's been learned.
resetOutputNeurons() - Method in class org.gaardeon.bottled2.ChessBrain
resetSynapses() - Method in class org.gaardeon.bottled.simple.AbstractBottle: Reset only the synapses' transient state -- leaves neuron state untouched.
resetSynapses() - Method in class org.gaardeon.bottled.simple.Bottle: Reset only the synapses' transient state -- leaves neuron state untouched.
result - Variable in class org.gaardeon.bottled.minichess.Game.GameRecord
REWARD_SIGNAL - Enum constant in enum class org.gaardeon.bottled2.HormoneType
rewind() - Method in class org.gaardeon.bottled.BitBuffer
rooks() - Method in record class org.gaardeon.bottled.simple.ChessBrainRunner.BoardHash: Returns the value of the rooks record component.
rooks() - Method in record class org.gaardeon.bottled2.ChessBrainRunner.BoardHash: Returns the value of the rooks record component.
rooks() - Method in record class org.gaardeon.bottled3.ChessBrainRunner.BoardHash: Returns the value of the rooks record component.

S

setCurrentWeight(Predicate, Supplier) - Method in class org.gaardeon.bottled.SynapseSet
setExcitation(double) - Method in class org.gaardeon.bottled2.Neuron
setHappiness(double) - Method in class org.gaardeon.bottled2.Neuron
setInputs(double[]) - Method in class org.gaardeon.bottled.simple.ChessBrain: Drive the input neurons of the input bottle.
setInputs(double[]) - Method in class org.gaardeon.bottled2.Bottle
setInputs(double[]) - Method in class org.gaardeon.bottled2.ChessBrain
setInputs(double[]) - Method in class org.gaardeon.bottled3.ChessBrain: Latch the given input pattern onto the drive map.
setThreshold(double) - Method in class org.gaardeon.bottled2.Neuron
shortTermRate() - Method in class org.gaardeon.bottled.simple.Neron
SignalRateSmoother - Class in org.gaardeon.bottled.functions
SignalRateSmoother(double) - Constructor for class org.gaardeon.bottled.functions.SignalRateSmoother
size() - Method in class org.gaardeon.bottled.simple.PopulationCoder
slice() - Method in class org.gaardeon.bottled.BitBuffer
slice(int, int) - Method in class org.gaardeon.bottled.BitBuffer
squareName(int) - Static method in record class org.gaardeon.bottled.minichess.Move
startingPosition() - Static method in class org.gaardeon.bottled.minichess.Position
step() - Method in class org.gaardeon.bottled.simple.AbstractBottle: Single-bottle convenience that runs both phases back-to-back.
step() - Method in class org.gaardeon.bottled.simple.Bottle: Single-bottle convenience that runs both phases back-to-back.
step() - Method in class org.gaardeon.bottled.simple.ChessBrain: One tick of the whole pipeline.
step() - Method in class org.gaardeon.bottled.simple.Neron
step() - Method in class org.gaardeon.bottled.simple.Synapse
step() - Method in class org.gaardeon.bottled3.ChessBrain: Advance the entire network by one tick under the currently latched input drive.
step() - Method in class org.gaardeon.bottled3.Connection: Advance this connection one tick.
step() - Method in class org.gaardeon.bottled3.Neuron: Advance this neuron one tick.
step(Map) - Method in class org.gaardeon.bottled3.Network: Advance the simulation by one tick.
stepNeurons() - Method in class org.gaardeon.bottled.simple.AbstractBottle: Phase 2 of a tick: step every neuron in this bottle.
stepNeurons() - Method in class org.gaardeon.bottled.simple.Bottle: Phase 2 of a tick: step every neuron in this bottle.
stepSynapses() - Method in class org.gaardeon.bottled.simple.AbstractBottle: Phase 1 of a tick: step every synapse in this bottle.
stepSynapses() - Method in class org.gaardeon.bottled.simple.Bottle: Phase 1 of a tick: step every synapse in this bottle.
stimulateInputs(double[]) - Method in class org.gaardeon.bottled.simple.AbstractBottle: Drive the input neurons by exciting each one with the corresponding signal value.
stimulateInputs(double[]) - Method in class org.gaardeon.bottled.simple.Bottle: Drive the input neurons by exciting each one with the corresponding signal value.
strength() - Method in record class org.gaardeon.bottled2.Hormone: Returns the value of the strength record component.
strengthen(double) - Method in class org.gaardeon.bottled2.Connection
STRING - Enum constant in enum class org.gaardeon.bottled.InputType
STRING - Enum constant in enum class org.gaardeon.bottled.OutputType
SubtractingRationalDiminisher - Class in org.gaardeon.bottled.functions
SubtractingRationalDiminisher(double) - Constructor for class org.gaardeon.bottled.functions.SubtractingRationalDiminisher
sumAbsEffectiveWeights() - Method in class org.gaardeon.bottled2.Bottle
sumAbsWeights() - Method in class org.gaardeon.bottled3.ChessBrain
symbol - Variable in enum class org.gaardeon.bottled.minichess.Piece
Synapse - Class in org.gaardeon.bottled.simple
Synapse(Neron, Neron, double, boolean) - Constructor for class org.gaardeon.bottled.simple.Synapse
synapseCount() - Method in class org.gaardeon.bottled.simple.AbstractBottle
synapseCount() - Method in class org.gaardeon.bottled.simple.Bottle
synapses - Variable in class org.gaardeon.bottled.simple.AbstractBottle
synapses - Variable in class org.gaardeon.bottled.simple.Bottle
SynapseSet - Class in org.gaardeon.bottled
SynapseSet(int, ByteBuffer) - Constructor for class org.gaardeon.bottled.SynapseSet

T

teach(double) - Method in class org.gaardeon.bottled.simple.ChessBrain: Apply a teaching signal toward targetEval for the coding neurons.
teach(List, double) - Method in class org.gaardeon.bottled.simple.PopulationCoder: Apply a Gaussian-shaped teaching excitation to the given neurons, centered on targetValue.
teachDecisionMaking() - Method in class org.gaardeon.bottled.simple.ChessBrain
TEXT - Enum constant in enum class org.gaardeon.bottled.InputType
TEXT - Enum constant in enum class org.gaardeon.bottled.OutputType
theta - Variable in class org.gaardeon.bottled3.Neuron: BCM sliding threshold.
Threading - Section in class org.gaardeon.bottled3.NeuralModel
Threading model - Section in class org.gaardeon.bottled.simple.AbstractBottle
Threading model - Section in class org.gaardeon.bottled.simple.Bottle
to() - Method in record class org.gaardeon.bottled.minichess.Move: Returns the value of the to record component.
toBoardHash() - Method in class org.gaardeon.bottled.minichess.Position: Returns {pawns, bishops, knights, rooks, queens, kings, whiteColors} as seven bitboards, matching the BoardHash record used by the neural net.
toString() - Method in record class org.gaardeon.bottled.ConnectionRange: Returns a string representation of this record class.
toString() - Method in record class org.gaardeon.bottled.minichess.Move: Returns a string representation of this record class.
toString() - Method in record class org.gaardeon.bottled.simple.ChessBrainRunner.BoardHash: Returns a string representation of this record class.
toString() - Method in record class org.gaardeon.bottled2.ChessBrainRunner.BoardHash: Returns a string representation of this record class.
toString() - Method in record class org.gaardeon.bottled2.Hormone: Returns a string representation of this record class.
toString() - Method in record class org.gaardeon.bottled3.ChessBrainRunner.BoardHash: Returns a string representation of this record class.
totalNeurons() - Method in class org.gaardeon.bottled.simple.AbstractBottle
totalNeurons() - Method in class org.gaardeon.bottled.simple.Bottle
totalNeurons() - Method in class org.gaardeon.bottled2.Bottle
type() - Method in record class org.gaardeon.bottled2.Hormone: Returns the value of the type record component.

U

UNCONNECTED - Enum constant in enum class org.gaardeon.bottled.ConnectionStyle
update() - Method in class org.gaardeon.bottled2.ChessBrain
update(double, double) - Method in class org.gaardeon.bottled.functions.AddingRationalDiminisher
update(double, double) - Method in class org.gaardeon.bottled.functions.SignalRateSmoother
update(double, double) - Method in class org.gaardeon.bottled.functions.SubtractingRationalDiminisher
update(double, double) - Method in interface org.gaardeon.bottled.functions.ValueUpdate
updateExcitation() - Method in class org.gaardeon.bottled2.Bottle
updateExcitation() - Method in class org.gaardeon.bottled2.Neuron
updateFiringState() - Method in class org.gaardeon.bottled2.Bottle
updateFiringState() - Method in class org.gaardeon.bottled2.Neuron

V

V - Variable in class org.gaardeon.bottled3.Neuron: Membrane potential (mV).
valueOf(String) - Static method in enum class org.gaardeon.bottled.BottleType: Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class org.gaardeon.bottled.ConnectionStyle: Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class org.gaardeon.bottled.InputType: Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class org.gaardeon.bottled.minichess.Game.Result: Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class org.gaardeon.bottled.minichess.Piece: Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class org.gaardeon.bottled.OutputType: Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class org.gaardeon.bottled2.HormoneType: Returns the enum constant of this class with the specified name.
values() - Static method in enum class org.gaardeon.bottled.BottleType: Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class org.gaardeon.bottled.ConnectionStyle: Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class org.gaardeon.bottled.InputType: Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class org.gaardeon.bottled.minichess.Game.Result: Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class org.gaardeon.bottled.minichess.Piece: Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class org.gaardeon.bottled.OutputType: Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class org.gaardeon.bottled2.HormoneType: Returns an array containing the constants of this enum class, in the order they are declared.
ValueUpdate - Interface in org.gaardeon.bottled.functions: Functions that return a new value based on the current "state" value and a new input.

W

wasFiring() - Method in class org.gaardeon.bottled2.Neuron
wasRecentlyActivated() - Method in class org.gaardeon.bottled2.Connection
WB - Enum constant in enum class org.gaardeon.bottled.minichess.Piece
weaken(double) - Method in class org.gaardeon.bottled2.Connection
weight - Variable in class org.gaardeon.bottled3.Connection: Synaptic strength.
WHITE_WINS - Enum constant in enum class org.gaardeon.bottled.minichess.Game.Result
whiteToMove - Variable in class org.gaardeon.bottled.minichess.Position
wireInternalStructure(double, double, double, double) - Method in class org.gaardeon.bottled.simple.Bottle: Build the default internal topology: input→internal feedforward, internal↔internal hopfield-style, internal→output feedforward.
WK - Enum constant in enum class org.gaardeon.bottled.minichess.Piece
wMax - Variable in class org.gaardeon.bottled3.Connection
wMin - Variable in class org.gaardeon.bottled3.Connection
WN - Enum constant in enum class org.gaardeon.bottled.minichess.Piece
WP - Enum constant in enum class org.gaardeon.bottled.minichess.Piece
WQ - Enum constant in enum class org.gaardeon.bottled.minichess.Piece
WR - Enum constant in enum class org.gaardeon.bottled.minichess.Piece

Y

y - Variable in class org.gaardeon.bottled3.Neuron: Activity trace: a low-pass-filtered estimate of recent firing rate.

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